Protein
  Analysis
  Toolkit

MUSCLE
Description Multiple sequence alignment
URL http://www.drive5.com/muscle
Help http://www.drive5.com/muscle/muscle.html

Input
Type your input query in the box below:
(Input should correspond to at least two protein sequences)
(Click here to get an input example)

or upload your input query from a file :

or use previous input/output compatible with MUSCLE:

MUSCLE options
Output format Refine alignment
Profile-profile alignment HHclus profile-profile alignment
Profile-sequence alignment Realign HHclus clusters

Output redirection
You may redirect the MUSCLE output to one selected tool: