P
rotein
A
nalysis
T
oolkit
CLUSTALW
Description
Multiple sequence alignment based on a clustering guide tree
URL
http://www.ebi.ac.uk/clustalw/
Help
http://www.ebi.ac.uk/clustalw/clustalw_frame.html
Input
Type your input query in the box below:
(Input should correspond to at least two protein sequences)
(
Click here to get an input example
)
or upload your input query from a file :
or use previous input/output compatible with CLUSTALW:
Select input from this list
I1
O1
O2
O3
CLUSTALW options
Guide tree construction
Slow
Fast
Gap extending penalty
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1
1.1
1.2
1.3
1.4
1.5
2
3
10
Gap opening penalty
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
20
999
Additional options
Output redirection
You may redirect the CLUSTALW output to one selected tool:
Send output to selected tool
BIONJ
CAST
CDHIT
COLOR
CONSENSUS
DSC
ENTREZ
ESPRIPT
EVAL23D
EVDTREE
FASTA
FASTME
GNUPLOT
GREP
HITSCE
HMM
HTML
KNOTER1D
KNOTER1D3D
MATRIX
MSF
MUSCLE
MVIEW
NCOILS
NETASA
PIR
PREDATOR
PROFIT
PSIPRED
PSORT
PS_SCAN
SEG
SEGMENT
SELEX
SEQNAME
SIGNALP
SIMPA96
SORT
SRS
TABLE
TITO
TMAP
TMPRED
TOPPRED
VERIFY3D
WEBLOGO
XML