Protein
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MATRIX
Description Pairwise scoring matrix from aligned sequences
Information Each sequence pair in the input alignment is compared and all the pairwise scores obtained using the chosen scoring method are collected in a global scoring matrix. The alignment columns with a mean percent identity below the level specified by the "Minimum conservation" option are not considered in the score calculation. The output starts with the number of aligned sequences in the first line, followed by successive protein names and associated matrix rows, each on a different line.

Input
Type your input query in the box below:
(Input should correspond to one multiple protein sequence alignment)
(Click here to get an input example)

or upload your input query from a file :

or use previous input/output compatible with MATRIX:

MATRIX options
Scoring method Minimum conservation